FastQCFastQC Report
Thu 23 May 2024
EGAF00005741364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005741364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101989545
Total Bases14.9 Gbp
Sequences flagged as poor quality0
Sequence length8-150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNN2588180.25376914859263267No Hit
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG1642750.16107043128783444No Hit
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG1497550.14683367790296545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)