FastQCFastQC Report
Sat 25 Jun 2022
EGAF00005741654

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005741654
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113190557
Sequences flagged as poor quality0
Sequence length100
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG6381210.5637581587305026No Hit
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT2525570.22312550330501507No Hit
TCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAA1488950.131543658717043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)