FastQCFastQC Report
Tue 5 Jul 2022
EGAF00005741787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005741787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173128551
Sequences flagged as poor quality0
Sequence length100
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14968600.8645945405041828No Hit
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATACGGATCTCGTA1823050.10530036723983209Illumina Paired End PCR Primer 2 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)