FastQCFastQC Report
Fri 2 Jun 2023
EGAF00005741807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005741807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences146423861
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAATAAATCTCGTA2548390.17404198896244102Illumina Paired End PCR Primer 2 (97% over 36bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1860610.1270701364718145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)