EGAF00005744125 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005744125
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52026329
Sequences flagged as poor quality	0
Sequence length	50-51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG	197913	0.3804093116006705	No Hit
CTCAGTTCGACGAGGATGACGGTATAGAGTTTTCACTCATTTTGTTCAGCT	179270	0.34457553213104847	No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT	118617	0.22799417579510559	No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACG	74824	0.14381948801346334	No Hit
CCTGAACATGCCCTGTTCCTACTCTCTCACTCCAGTTACCACAATTTCTCT	65952	0.126766583896396	No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAGA	64819	0.12458884039271731	No Hit
CTCAGTTCCGATGAGAACGACGGTATGAGTTCTCACTCATTTTGTTCAGCT	60581	0.11644296486880709	No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG	56183	0.10798955275126178	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TTCGACG	32875	33.19346	6
GTTCGAC	33505	32.967106	5
TCGACGA	33325	32.69122	7
AGTTCGA	34075	32.39583	4
CGACGAG	33660	32.018276	8
CAGTTCG	35615	31.058264	3
CGAGGAT	40390	29.97002	11
GACGAGG	43970	29.85304	9
ACGAGGA	44910	29.694208	10
CGGTATA	50525	29.007927	20
ATAGAGT	56075	27.870243	24
TATAGAG	57510	27.249153	23
GTATAGA	57190	27.224585	22
TAGAGTT	57755	27.079021	25
ATGACGG	51985	25.726295	16
GGTATAG	58020	25.14048	21
GATGACG	52205	25.053408	15
CTCAGTT	93135	24.621223	1
TGACGGT	54600	24.592995	17
ACTCATT	89525	24.579315	35