FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005744139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55650388
Sequences flagged as poor quality0
Sequence length49-51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGTTCGACGAGGATGACGGTATAGAGTTTTCACTCATTTTGTTCAGCT663440.11921570070634548No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG636300.1143388254543706No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACATA617050.11087973007483792No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)