FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005744155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78352055
Sequences flagged as poor quality0
Sequence length25-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA1498250.09.68331694-95
ATCGGAA1356050.09.64518994-95
AGATCGG1716700.09.32519494-95
TAGATCG500350.09.10605894-95
TCGGAAG1361650.08.76952694-95
CGGAAGA1315800.08.53549394-95
ACACGTC453750.08.4637994-95
CGTCTGA327650.08.17675294-95
CACACGT579300.07.66655194-95
CAGATCG720200.07.42394894-95
AAGATCG543250.07.13817794-95
CACGTCT486550.07.03063594-95
GCACACG720950.07.00952894-95
ACGTCTG411750.06.98836494-95
AGAGCAC1176550.06.26933394-95
GAGATCG642400.06.09014594-95
AGCACAC1006800.05.81312594-95
GAAGAGC1674500.05.668484794-95
AAGAGCA1501000.05.655328894-95
GAGCACA1190500.05.43768594-95
Produced by FastQC (version 0.11.5)