FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005744173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences138957678
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC132350.012.3754623
TTCCGAT162850.010.2757632
GATCGGA380950.010.04521170
AGATCGG491550.09.10390370
CCGATCT190600.08.8134314
ATCGGAA358100.08.65072270
TAGATCG176550.08.296844570
CGATCTA72300.06.09811745
AAGATCG339250.05.02019870
Produced by FastQC (version 0.11.5)