FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005744199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81084609
Sequences flagged as poor quality0
Sequence length25-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA1783000.09.49880694-95
ATCGGAA1617450.09.47362194-95
AGATCGG2026100.09.09112694-95
ACACGTC543200.08.90977594-95
TCGGAAG1579550.08.77842994-95
CGTCTGA380750.08.54247394-95
TAGATCG614300.08.4480294-95
CGGAAGA1523700.08.18182794-95
ACGTCTG477850.08.08324794-95
CACGTCT565000.07.829138894-95
CACACGT680000.07.806111394-95
CAGATCG776550.07.68814694-95
GCACACG822600.07.64788294-95
AAGATCG676850.07.218804494-95
AGAGCAC1327600.06.68562794-95
AGCACAC1147600.06.237795494-95
GAGATCG705300.06.202060794-95
AAGAGCA1679650.06.048587394-95
GAGCACA1340950.05.97656594-95
GAAGAGC1868200.05.80644794-95
Produced by FastQC (version 0.11.5)