FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005744202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58471796
Sequences flagged as poor quality0
Sequence length25-51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA1144770.19578156963059595No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG1048650.17934287498198276No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG797260.13634949745685937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)