FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005744215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79478030
Sequences flagged as poor quality0
Sequence length25-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1478500.09.37984594-95
GATCGGA1628400.09.22742994-95
AGATCGG1852400.08.98043294-95
ACACGTC512000.08.76864794-95
TCGGAAG1468850.08.5625594-95
CGTCTGA357400.08.4554594-95
TAGATCG560300.08.32272894-95
CGGAAGA1422600.08.16335994-95
CACACGT636300.07.988281794-95
CAGATCG709550.07.6286894-95
ACGTCTG452550.07.45800794-95
CACGTCT534850.07.33868994-95
AAGATCG618000.07.33489894-95
GCACACG773650.07.105116494-95
AGAGCAC1261250.06.371021794-95
GAGATCG681300.06.13082294-95
AGCACAC1074500.06.002049494-95
AAGAGCA1600500.05.91221394-95
GAGCACA1279750.05.85595494-95
GAAGAGC1786100.05.74676994-95
Produced by FastQC (version 0.11.5)