FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005744223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102674300
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC94000.011.2047416
GATCGGA508100.010.94554770
AGATCGG630750.010.79506670
ATCGGAA452400.09.92284870
TAGATCG208450.09.26316670
TTCCGAT118600.09.0576915
CCGATCT136400.08.003947
TCGGAAG528250.07.031955270
AAGATCG334850.06.4467470
CGGAAGA536250.06.312764670
CAGATCG313700.05.730765370
ACGTAAC56650.05.68288432
CGATCTA51750.05.27409848
Produced by FastQC (version 0.11.5)