EGAF00005744224 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005744224
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	102674300
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	52575	0.0	10.516868	70
AGATCGG	64860	0.0	10.463101	70
TAGATCG	20755	0.0	9.802504	70
ATCGGAA	47105	0.0	9.545126	70
CGTTCGT	4610	0.0	6.910421	36
TCGGAAG	57480	0.0	6.384518	70
CAGATCG	31980	0.0	6.033325	70
CGGAAGA	57390	0.0	6.004025	70
GTTAGCG	5050	0.0	5.820045	31
CGCCGTA	5920	0.0	5.7326765	58
GCGTTCG	6300	0.0	5.5538034	35
GCCGTAT	6160	0.0	5.5093274	59
AAGATCG	37290	0.0	5.437131	70
AGCGTCG	18960	0.0	5.3190947	70
CGTATCA	6480	0.0	5.237277	61
TTAGCGT	6190	0.0	5.0874114	32
GCGTCGT	15280	0.0	5.041769	70