FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005744255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55881581
Sequences flagged as poor quality0
Sequence length34-51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1121480.20068866698671248No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT966940.17303375865475246No Hit
CTCGTCTTGCTGTGTTATGCCCGCCTCTTCACGGGCAGGTCAATTTCACTG692230.12387444800461177No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTT664570.1189246954197663No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCGC569960.10199425102163806No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)