FastQCFastQC Report
Fri 10 May 2024
EGAF00005744256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55881581
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length25-51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA887430.15880545684632652No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGT650230.116358554708751No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT598020.10701558354263456No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC575440.10297489614690752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)