FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005744275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75930680
Sequences flagged as poor quality0
Sequence length25-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA914500.09.57628694-95
ATCGGAA836400.09.11889894-95
AGATCGG1055450.09.02334494-95
TAGATCG321700.08.5739194-95
TCGGAAG879750.07.900539494-95
CGGAAGA886100.07.1685194-95
CAGATCG472250.07.132397794-95
ACACGTC321650.06.930305594-95
CGTCTGA238650.06.65108594-95
AAGATCG378300.06.58034194-95
CACACGT430850.06.160247394-95
CACGTCT372850.05.955368594-95
GCACACG520200.05.813570594-95
ACGTCTG320200.05.706598894-95
GAGATCG484550.05.388039694-95
Produced by FastQC (version 0.11.5)