FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005744289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53075594
Sequences flagged as poor quality0
Sequence length34-51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT895560.1687329208223275No Hit
CTCAGTTCGACGAGGATGACGGTATAGAGTTTTCACTCATTTTGTTCAGCT712720.13428394225790483No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG704220.1326824528803201No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)