FastQCFastQC Report
Thu 9 May 2024
EGAF00005744334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53897954
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length25-51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA989280.18354685597156434No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA877570.1628206517820695No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA838830.15563299489995483No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC689850.12799187145397023No Hit
CTTCCATATATACATTCCTTGGAAAGCTGAACAAAATGAGTGAAAACTCT614870.11408039718910294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)