FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005744349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78666752
Sequences flagged as poor quality0
Sequence length25-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1849450.09.24211494-95
GATCGGA2040250.09.21643894-95
AGATCGG2318450.09.15663994-95
CGTCTGA414650.09.1350494-95
ACACGTC599150.09.11526294-95
TAGATCG679100.08.77592994-95
TCGGAAG1799300.08.76810194-95
CGGAAGA1722250.08.55826294-95
ACGTCTG524350.08.3939994-95
CACACGT741100.08.38766394-95
CAGATCG925600.08.12860894-95
CACGTCT612650.08.08220394-95
GCACACG897300.07.800724594-95
AAGATCG697900.07.68928694-95
AGAGCAC1435050.06.937021794-95
AGCACAC1215100.06.82726694-95
GAGATCG790800.06.571072694-95
GAGCACA1437150.06.518006394-95
AAGAGCA1797050.06.422816394-95
GAAGAGC2017200.06.305890694-95
Produced by FastQC (version 0.11.5)