FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005744382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences177014628
Sequences flagged as poor quality0
Sequence length76
%GC53

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA116900.010.89431961
GCCGTAT124600.010.16492659
CGCCGTA130850.09.86653958
GATCGGA645450.08.69159570
AGATCGG785000.08.65429570
TAGATCG244750.08.48460470
ATCGGAA577200.08.29964270
CCGTATC180250.07.317747660
TCGTGTA211750.06.0476914
GCGTGTA240650.05.51320339
GTCGTGT274050.05.045291413
Produced by FastQC (version 0.11.5)