FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005744383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences148822790
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC139950.012.9015396
TTCCGAT157200.011.7306655
GATCGGA473500.09.65091170
AGATCGG599500.09.5690870
ATCGGAA423500.08.87885670
TAGATCG190600.08.67820370
CCGATCT217350.08.64537
TCGTATG81350.08.21580945
CGATCTA67250.06.71215728
CGTATGC103000.06.624953346
CTCGTAT112100.06.118187444
TATGCCG115850.05.95055548
TCGGAAG623350.05.486919470
Produced by FastQC (version 0.11.5)