EGAF00005744399 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005744399
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	104221714
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	36290	0.0	10.863746	70
AGATCGG	45925	0.0	10.44644	70
TAGATCG	16330	0.0	9.656958	70
ATCGGAA	33570	0.0	9.593524	70
TCGTATG	6665	0.0	9.135338	45
CGTATGC	7395	0.0	8.423043	46
TATGCCG	8285	0.0	7.5604587	48
CTCGTAT	8165	0.0	7.49989	44
TCCGATC	8785	0.0	7.289074	6
CGCCTAG	9560	0.0	6.918019	33
TCGGAAG	42390	0.0	6.539237	70
ACGCCTA	10350	0.0	6.3224125	32
AAGATCG	27850	0.0	5.8889065	70
CAGATCG	26430	0.0	5.5953765	70
TTCCGAT	11455	0.0	5.467913	5
CCGATCT	12910	0.0	5.3937354	7
CGGAAGA	44145	0.0	5.374291	70
TCTCGTA	12095	0.0	5.2075796	43