EGAF00005744407 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005744407
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	106108593
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGATC	10330	0.0	11.415472	6
TTCCGAT	11810	0.0	10.399716	5
ATCGGAA	109575	0.0	9.866211	70
GATCGGA	126035	0.0	9.851146	70
AGATCGG	149810	0.0	9.5579405	70
TAGATCG	46130	0.0	9.024846	70
TCGGAAG	111430	0.0	8.440868	70
CCGATCT	15045	0.0	8.163537	7
CGGAAGA	104715	0.0	7.760659	70
TCGTATG	6175	0.0	7.5934706	45
CGATCTA	4920	0.0	7.325482	8
CAGATCG	57965	0.0	7.1821976	70
AAGATCG	61260	0.0	6.7272425	70
CGTATGC	7335	0.0	6.4881897	46
CTCGTAT	8040	0.0	6.0496573	44
CTAGATC	31120	0.0	5.7655025	70
TATGCCG	8800	0.0	5.64665	48
TTAGATC	28505	0.0	5.175685	70
ACACGTC	34575	0.0	5.0981493	70