EGAF00005744410 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005744410
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	109249420
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	5875	0.0	13.1612625	58
GCCGTAT	7425	0.0	10.46091	59
CGTATCA	7665	0.0	10.224588	61
AGATCGG	83995	0.0	10.105107	70
GATCGGA	69605	0.0	9.759399	70
ATCGGAA	62445	0.0	9.521421	70
TAGATCG	27105	0.0	9.18506	70
CCGTATC	10965	0.0	7.3069015	60
TCGGAAG	73920	0.0	7.1149154	70
CAGATCG	37650	0.0	6.826418	70
CGGAAGA	70880	0.0	6.3777027	70
TCGCCGT	13240	0.0	6.26282	57
AGCGTCG	23410	0.0	5.938146	70
AAGATCG	47310	0.0	5.7434196	70
TGGTCGC	15325	0.0	5.7304087	54
GTCGCCG	14210	0.0	5.7121534	56
AAGAGCG	47485	0.0	5.383047	70
AGAGCGT	34670	0.0	5.3023357	70
GCGTCGT	18955	0.0	5.264812	70