FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005744427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134475861
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC123950.011.6873786
GATCGGA433900.010.50752870
TCGTATG78500.010.25254145
TTCCGAT145100.010.0561765
AGATCGG553800.09.62474470
CGTATGC92800.09.351665546
ATCGGAA389450.09.07030270
TAGATCG182950.08.81126770
CCGATCT188950.07.81498867
CTCGTAT104150.07.794694444
TATGCCG113750.07.321691548
CGATCTA62600.07.09889758
TCTCGTA158450.05.4767943
TCGGAAG557750.05.397175370
Produced by FastQC (version 0.11.5)