FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005745451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005745451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470617
Sequences flagged as poor quality0
Sequence length1-144
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTAACAAACCCTGCTTCTTTATATTCAGGAGATGTTCTGGACTCATA33790.7179936126404274No Hit
ACAGTAACAAACCCTGCTTCTTTATATTCAGGAGATGTTCTGGACTCACA26200.5567159707362888No Hit
TGACAAAGGTTAGTTGAATGAATGATCACTGTAGAGCACCTCCCTATTTT12800.2719833750162022No Hit
TGATAAAGGTTAGTTGAATGAATGATCACTGTAGAGCACCTCCCTATTTT12230.2598716153475119No Hit
ACAATAACAAACCCTGCTTCTTTATATTCAGGAGATGTTCTGGACTCATA11400.242235193373805No Hit
ACAATAACAAACCCTGCTTCTTTATATTCAGGAGATGTTCTGGACTCACA9850.2092997065554368No Hit
TGACAAAGGTCAGTTGAATGAATGATCACTGTAGAGCACCTCCCTATTTT9800.20823727149677976No Hit
TGATAAAGGTCAGTTGAATGAATGATCACTGTAGAGCACCTCCCTATTTT8060.1712645314555148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)