FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005745460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005745460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555831
Sequences flagged as poor quality0
Sequence length1-144
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGTAACAAACCCTGCTTCTTTATATTCAGGAGATGTTCTGGACTCATA75311.354908236496345No Hit
ACAATAACAAACCCTGCTTCTTTATATTCAGGAGATGTTCTGGACTCATA18920.34039123402616983No Hit
TGACAAAGGTTAGTTGAATGAATGATCACTGTAGAGCACCTCCCTATTTT15430.2776023647475582No Hit
TGATAAAGGTTAGTTGAATGAATGATCACTGTAGAGCACCTCCCTATTTT14350.25817199832323134No Hit
TGACAAAGGTCAGTTGAATGAATGATCACTGTAGAGCACCTCCCTATTTT12790.23010591348809262No Hit
TGATAAAGGTCAGTTGAATGAATGATCACTGTAGAGCACCTCCCTATTTT8280.14896614258650562No Hit
ACAGTAACAAACCCTACTTCTTTATATTCAGGAGATGTTCTGGACTCATA7470.1343933677682605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)