FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005745462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005745462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3192239
Sequences flagged as poor quality0
Sequence length2-144
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAAAGGTGGACAGAAGGGTAGATACGTTTTATTTTTGAATTATAGTTT63510.1989512689995956No Hit
CCCAAATGCTACACCTCCAATAAAAAAAAACTCAAGAAATAAAAGAAAAA60230.18867634910794587No Hit
AAGAAAGGTGGACAGAAGGGTCGGGTTTGGTGTGGAGGGTGAGCAAGAGG58680.18382082293963578No Hit
AAGAAAGGTGGACAGAAGGGCAGATACGTTTTATTTCTGAATTACAGTTT51930.16267578962602738No Hit
AAGAAAGGTGGACAGAAGGGGCCAGCCTGCAAGGTGGATTCCAATTACCC45660.1430344031258311No Hit
CCCAAATGCTACACCTCCAGTAAAAAGGAACTCAAAAAATAAAAGGAAAA40860.12799793499170958No Hit
AAGAAAGGTGGACAGAAGGGTGGGGGATGTTCCACTTTCTTTGTGAATGT33480.10487936523549772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)