FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005745472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005745472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences712660
Sequences flagged as poor quality0
Sequence length2-144
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGATCG100.008948956134.136529
CAATAAC4250.0116.7776952
GCCGCCT956.3964526E-6116.19351138
AGGCCGT1500.0110.1168136-137
GCTGCCT1606.7648216E-9103.48484138
CAGTAAC9800.097.8649142
TGATAAA6050.095.336711
ACAGTAA10300.092.463041
AAGGTTA8050.086.64726
CAAAGGT7100.085.960744
AGTAACA12300.078.5189363
TAAAGGT7750.076.154944
AGGTCGT1750.072.81697136-137
CGTGCTG150.002080612871.19416122-123
AAGGTCA6900.070.956286
AAAGGTT9900.070.455555
ACAAACC21250.070.3822257
GTCGTCT3555.456968E-1269.961586138
GCCGTTT1250.002766984566.23029138
AAGCTTT4750.063.906433138
Produced by FastQC (version 0.11.5)