FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005745480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005745480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1376012
Sequences flagged as poor quality0
Sequence length2-144
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACAGTTTACATTCCCCAAAGAGAATTGACTAATTGAAAGGTTTAAGAA97640.709586834998532No Hit
TGTGGAGGAGAATGAATGGCATCTATGGCCTTAATTTTGCCAGCAAAGAC42350.3077734787196623No Hit
TGTGGAGGAGAATGAATGGCTTCTACGGTGACGAATCAGTCATCCTTATT23450.1704200254067552No Hit
TCACAGTTTACATTCCCCAAAGAGAATTAACTAATTAAAAAGTTTAAAAA15960.11598736057534381No Hit
TCACAGTTTACATTCCCCAAAACAAGGATAGAGGCTAGGATCATCCCTAA14940.10857463452353613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)