FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005745492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005745492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1032440
Sequences flagged as poor quality0
Sequence length4-144
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACAGTTTACATTCCCCAAAGAGAATTGACTAATTGAAAGGTTTAAGAA116431.127716864902561No Hit
TGTGGAGGAGAATGAATGGCATCTATGGCCTTAATTTTGCCAGCAAAGAC55320.5358180620665608No Hit
GGAGGAGAATGAATGGCATCTATGGCCTTAATTTTGCCAGCAAAGACAGT12620.12223470613304405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)