FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005751735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005751735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36731554
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG7704500.066.3016051
GTGTTGG7987550.063.603192
TGTTGGG8091600.062.0844963
GTTGGGT8552250.058.5444954
TGGGTGT9326050.053.8639766
TTGGGTG9610700.052.850165
GGGTGTG9973800.050.225267
GGTGTGT10444550.047.7024158
GTGTGTT10905100.045.5585259
GTTGCGT44700.031.175484
TTGGTTT4634300.024.5165923
TGGTTTT4215700.024.2481784
TTGCGTG60100.023.6594665
TGTTGCG59600.023.3279653
TGTGTTT10772650.022.89247710-11
TTTGGTT5681300.022.4468862
GGTTTTT4242350.021.385785
GTGTTTG12393550.021.21563510-11
GTTTGGA1282400.020.91553912-13
TGTTTGG12330850.019.77156312-13
Produced by FastQC (version 0.11.5)