FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005751748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005751748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61044045
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG13247300.049.429071
GTGTTGG13883050.047.0656782
TGTTGGG14232000.045.460723
GTTGGGT15163050.042.538334
TGGGTGT16711400.039.170756
TTGGGTG17104850.038.8641175
GGGTGTG17694000.036.836537
GGTGTGT19396250.033.436928
GTGTGTT20677800.031.3062049
TTGGTTT11136000.024.5398243
TGGTTTT9887250.024.4391354
TTTGGTT13250200.022.8968322
GGTTTTT9932700.021.284775
GTTTGGT17139650.020.2026751
GTTGCGT42650.020.0929764
TGTCGGG32100.017.7147273
TGTTGCG48300.017.5616023
GTGTCGG32750.017.4062352
GTGTTTG24010550.016.9859281
TGTTTGG23973100.016.7060722
Produced by FastQC (version 0.11.5)