FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005751781

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005751781
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59120032
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG11063200.070.972811
GTGTTGG11930850.065.334222
TGTTGGG12260400.061.660113
GTTGGGT12841950.058.2764744
TTGGGTG14709500.051.4289555
TGGGTGT14617550.051.145416
GGGTGTG15854100.046.9025277
GGTGTGT17567150.042.1409158
GTGTGTT18463650.040.0402579
GTTGCGT76850.039.400064
TGTTGCG88000.035.015463
TTGCGTG99700.030.762375
TGCGTGT137650.023.0329916
GTGTTTG19978500.021.32418610-11
TGTGTTT17698950.020.71460710-11
GCGTGTG164500.019.539187
GTTTGGT11910450.018.99375312-13
CGTGTGT165650.018.697128
TGTTGGT1412950.017.9724483
TGTTTGG20577700.017.7555212-13
Produced by FastQC (version 0.11.5)