FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005751887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005751887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78877887
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG6657450.051.731221
GTGTTGG6762600.050.882752
TGTTGGG6759650.050.37663
GTTGGGT6768600.050.093564
TGGGTGT7509100.045.1109126
TTGGGTG7631600.044.6357885
GGGTGTG7969400.042.3654677
GGTGTGT9015350.037.4277278
GTGTGTT9668100.034.9109659
GTGTTTG8859100.020.37253810-11
TGTTTGG8681400.018.74291412-13
GTTTGGT5325100.018.730112-13
TGTGTTT9268200.017.79983710-11
GTTTGGG4613550.017.374112-13
TTGGGGG2226650.015.03803114-15
TCGATCG13550.014.74349182-83
TTGGTTT3920300.013.13017914-15
CGATCGC14650.012.83432682-83
TTTGGGG3450900.012.66470714-15
TTTGGTT4861400.012.49319214-15
Produced by FastQC (version 0.11.5)