FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005751899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005751899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66897822
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG15457900.071.321671
GTGTTGG16217250.067.581992
TGTTGGG16704550.064.223393
GTTGGGT17791750.060.0278664
TGGGTGT19634500.054.7911956
TTGGGTG19854400.054.644145
GGGTGTG20919400.051.14677
GGTGTGT23652150.045.0765578
GTGTGTT25002050.042.4952969
GTTGCGT83900.030.5095714
TGTTGCG100900.025.9852123
TTGCGTG106300.024.4627915
TGTGTTT24087300.021.90696710-11
GTGTTTG27757900.020.9012410-11
TGTTTGG28078300.018.7218912-13
GAACGAC197750.018.31555494
GTTTGGT18845300.018.10178812-13
GCGTGTG155650.017.112937
ACGACAT136250.016.87576394
TTGGTTT10679800.016.36753514-15
Produced by FastQC (version 0.11.5)