FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005751907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005751907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56112401
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG12094850.072.276321
GTGTTGG12704450.068.574992
TGTTGGG13021700.065.8403853
GTTGGGT13856350.061.578064
TGGGTGT15222600.056.352886
TTGGGTG15456550.055.8745845
GGGTGTG16239600.052.613357
GGTGTGT17856100.047.663458
GTGTGTT18702450.045.330689
GTTGCGT69600.023.5705094
TGTGTTT18117550.023.29108810-11
GTGTTTG20391700.022.49751510-11
TTGCGTG82400.020.739985
TGTTTGG20497500.020.45200512-13
GTTTGGT13476000.019.60277712-13
TGTTGCG86900.019.210673
GTTTGGG10102050.018.06906112-13
TTGGTTT7524250.016.84258814-15
TTTGGTT9757150.016.4079414-15
TTGGGTT3212800.016.09297614-15
Produced by FastQC (version 0.11.5)