FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005751927

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005751927
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67381360
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG13297100.071.363751
GTGTTGG14571600.064.685752
TGTTGGG15353150.060.005763
GTTGGGT16921850.054.1481174
TGGGTGT18972300.048.9550176
TTGGGTG19184450.048.7624785
GGGTGTG21288750.043.388157
GGTGTGT23805250.038.5673528
GTGTGTT24761350.036.6205989
GTTGCGT89900.030.1310084
TTGCGTG106400.026.2876555
TGTTGCG107700.025.7987253
TGTGTTT23841500.018.8847110-11
GTGTTTG27570000.018.58825510-11
TGCGTGT169950.017.4441876
GCGTGTG171850.017.338537
GAACGAC199850.017.27947694
GTTTGGT16923150.016.78924212-13
CGTGTGT178900.016.2626448
TGTTTGG27741650.016.18489312-13
Produced by FastQC (version 0.11.5)