FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005751971

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005751971
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51597769
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG10164250.080.379091
GTGTTGG10456350.077.601932
TGTTGGG10576300.075.431113
CCTAAGG1224500.074.924486
CTAAGGA1147600.073.648437
GTTGGGT11244850.070.5600364
AAGGAAC1200950.068.532679
CTTCCTA1407150.067.388793
TCCTAAG1352350.066.883825
TTCCTAA1412400.066.099784
GTCTTCC1449400.064.9343951
TTGGGTG12785600.062.494615
TGGGTGT12790000.061.9963846
TAAGGAA1388500.059.3932538
GGGTGTG13475750.058.689257
GGTGTGT14406250.054.6597448
TCTTCCT1789750.053.0192642
GTGTGTT14947650.052.2304239
AGGAACG1017200.043.51746410-11
CCTAACG42850.041.8016056
Produced by FastQC (version 0.11.5)