FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005752102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56743573
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG11528100.079.534081
GTGTTGG11813100.076.267432
TGTTGGG12026850.073.532333
GTTGGGT12740900.069.193534
TGGGTGT13927700.063.4692846
TTGGGTG14060800.063.273855
GGGTGTG14610400.060.4534657
GTTGCGT117750.057.2033044
GGTGTGT15673150.055.9919478
TGTTGCG124300.053.9403953
GTGTGTT16385350.053.3013089
TTGCGTG142850.047.3344965
GCGTGTG191550.037.88437
CGTGTGT206350.034.402848
TGCGTGT226050.031.6199576
GTGTCGG46350.027.333942
TGTGTTT16396900.026.35731110-11
GTTCGGT59600.025.4027964
GTGTTTG18446500.025.1205310-11
TGTCGGG47750.025.119573
Produced by FastQC (version 0.11.5)