FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005752155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71813714
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG23385250.074.653271
GTGTTGG25695600.067.825592
TGTTGGG28036300.061.0407263
GTTGGGT30258700.056.294254
TTGGGTG34399950.049.9021345
TGGGTGT34442850.049.5142636
GGGTGTG38264850.044.4553227
GGTGTGT42890550.039.4360778
GTGTGTT44018100.038.287989
GTTGCGT81000.023.6034554
GTGTTTG45357700.021.1729910-11
GTTTGGT26100300.020.89613312-13
TGTTGCG96750.020.3934843
TTGGTTT13182000.020.36155714-15
TGTGTTT42288550.019.81890910-11
TTGCGTG102800.018.9482085
TGTTTGG45910400.018.2513212-13
TTTGGTT17591550.018.08702714-15
GTTCGGT55650.017.9796244
TGGTTTT10846600.017.5121316-17
Produced by FastQC (version 0.11.5)