FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005752195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45443173
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATATATATATATATATATATATATATATATATATATATATATATATATA3457030.7607369318159187No Hit
ATATATATATATATATATATATATATATATATATATATATATATATATAT2500790.550311484631586No Hit
GTGTTGGGTGTGTTGGGTGTGTTGGGTGTGTTGGGTGTGTTGGGTGTGTT660060.14524954056355177No Hit
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAACCTTCCTGGTCAACTCCT526090.11576876465030292No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)