FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005752208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58593641
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG8514850.053.0392531
GTGTTGG8861750.050.915422
TGTTGGG9122550.048.8770563
GTTGGGT9531950.046.696354
TGGGTGT10565850.042.834256
TTGGGTG10865900.042.259575
GGGTGTG11242550.040.04167
GGTGTGT13134400.034.1175968
GTGTGTT14502050.030.8667289
TTGGTTT8326250.024.127923
TGGTTTT7297950.023.473244
TTTGGTT10109000.022.2851662
GTTTGGT12582750.020.0634861
GGTTTTT7312700.019.8524175
GTGTTTG16651350.016.2721961
TGTTTGG16723850.015.8069762
TGTGTTT14313650.015.666985510-11
GTGTCGG47900.014.012
TGGTTTG2112350.013.8721944
GTTTTTT9596050.013.3769296
Produced by FastQC (version 0.11.5)