FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005752213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87666652
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG14387750.083.111941
GTGTTGG14754000.080.978022
TGTTGGG14913600.079.862853
GTTGGGT15135500.078.6124954
TGGGTGT16016650.074.432186
GGGTGTG16297750.073.032137
TTGGGTG16588500.072.2208255
GGTGTGT16647800.071.37958
GTGTGTT17097650.069.327929
TGTGTTT17836850.033.1949710-11
GTGTTTG19366450.032.05993710-11
TGTTTGG19433450.030.23322912-13
GTTTGGG9378500.029.41419612-13
TTGGGGG4002850.026.76167314-15
TTTGGGG6002600.025.47255714-15
GTTTGGT12228500.024.45808212-13
TTGGGGT2233050.022.50065814-15
TTTGGTG4853400.021.27199614-15
TGGGGGG3482850.021.25010516-17
TTGGTGG2411000.020.81947314-15
Produced by FastQC (version 0.11.5)