FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005752286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65154892
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG15790150.080.196461
GTGTTGG16312900.077.2699662
TGTTGGG16443350.075.444753
GTTGGGT17307800.071.337554
TGGGTGT19071200.064.611476
TTGGGTG19262400.064.5821845
GGGTGTG19915900.061.679817
GGTGTGT21066750.058.0824248
GTGTGTT21834200.055.6563229
GTTGCGT81950.043.315654
TGTTGCG99200.035.664863
TTGCGTG107000.033.7293745
TGTGTTT22092100.027.363610-11
GTGTTTG25061650.025.5686710-11
TGTTTGG25156650.023.77085312-13
GTTTGGT15850050.023.27405512-13
GCGTGTG164650.023.1361737
TGCGTGT165550.022.6550466
CGTGTGT172000.021.4864858
TTGGTTT9349250.020.48671514-15
Produced by FastQC (version 0.11.5)