FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005752335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58748547
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTTGGG8884750.080.163231
GTTGGGT9057750.078.270362
TTGGGTG10703700.066.9518363
TGGGTGT11180150.063.5277184
GGGTGTG11812450.059.88775
GTTGCGT115500.059.1833042
GGTGTGT12345350.057.0843436
TGTTGCG124900.055.3466531
GTGTGTT12973600.054.837587
TTGCGTG136200.051.3944783
TGTGTTT14208950.049.2647868
GTGTTTG14900950.046.8499459
AGGAACG114700.045.803949
TGCGTGT191100.037.2278444
GCGTGTG195550.036.3275645
CGTGTGT201300.035.2097136
CCTAAGG216450.027.9850715
GGAACGA106350.026.1476210-11
TGTTTGG14991300.023.42736810-11
GTTTGGT10079550.022.2626610-11
Produced by FastQC (version 0.11.5)