FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005752374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58990678
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG10541950.076.284181
GTGTTGG11081400.072.131612
TGTTGGG11302750.069.334833
GTTGGGT12170950.064.0498664
TTGGGTG14035100.056.2582325
TGGGTGT14057450.055.8149726
GGGTGTG15259950.051.32447
GGTGTGT16785050.046.1583258
GTTGCGT87100.042.8396384
GTGTGTT17642900.042.4233939
TTGCGTG105200.036.4532055
TGTTGCG106650.035.8742453
TGCGTGT164050.025.3283886
GCGTGTG159950.025.069827
GTGTGTC408300.023.3282139
CGTGTGT171250.023.098128
TGTGTTT17636750.020.9946910-11
GTGTCGG53750.020.397692
GTCGGGT51400.019.7484994
GTGTTTG20665700.019.69283710-11
Produced by FastQC (version 0.11.5)