FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005752498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79909115
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG18577450.070.057141
GTGTTGG19272200.067.15342
TGTTGGG19771750.064.402373
GTTGGGT20818400.060.8996284
TGGGTGT22532800.056.433796
TTGGGTG22776750.056.3483925
GGGTGTG23379750.054.1329847
GGTGTGT25437800.049.5565838
GTGTGTT26822800.046.7261629
GTTGCGT95550.038.945194
TGTTGCG106850.035.331353
TTGCGTG129350.029.20855
TGTGTTT25996650.023.98976310-11
TGCGTGT169100.023.052066
GTGTTTG30070800.022.4163610-11
GCGTGTG175050.021.7812357
TGTTTGG30605700.020.27493712-13
CGTGTGT193400.019.5938368
ACGACAT270300.019.49664594
CGATCCG28300.019.14479474-75
Produced by FastQC (version 0.11.5)