FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005752526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5720037
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG1111450.076.485941
GTGTTGG1141150.073.223482
TGTTGGG1153350.070.660193
GTTGGGT1234700.065.570974
TTGGGTG1421150.057.514815
TGGGTGT1429550.056.6760186
GTTGCGT14150.055.0567254
GGGTGTG1537500.052.4599237
TGTTGCG15800.051.1072543
GGTGTGT1710500.046.88338
TTGCGTG17050.045.402645
GTGTGTT1816000.043.566019
TGCGTGT23400.034.4841046
GCGTGTG24500.032.1687627
CGTGTGT25500.030.5272468
TGTGTTT1813400.021.60157410-11
GTGTTTG2055600.020.8952410-11
GTGTTGC40750.020.2748742
GTTTGGT1281850.019.19144212-13
TGTTTGG2051450.018.94073712-13
Produced by FastQC (version 0.11.5)