FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005752528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005752528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9820076
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTGTTG1849950.080.14281
GTGTTGG1907550.076.0864942
TGTTGGG1933100.073.558443
GTTGGGT2073400.068.147724
GTTGCGT28750.067.100944
TGTTGCG31700.061.7702143
TTGGGTG2396350.059.5572245
TGGGTGT2410000.058.7598086
TTGCGTG34250.056.0331885
GGGTGTG2583600.054.647827
GGTGTGT2779100.050.550158
GTGTGTT2890750.048.1342629
GCGTGTG43150.045.1247027
TGCGTGT43700.044.882086
CGTGTGT46550.042.1141858
GTGTTGC76200.026.309662
TGTGTTT2913250.023.7110710-11
GTGTTTG3369750.022.22928610-11
GTTTGGT2087050.020.34999812-13
TGTTTGG3377700.020.32445712-13
Produced by FastQC (version 0.11.5)